基于不同烟草类型基因组重测序的烟草SSR标记的开发和应用

耿歆淇,杨惠娟,秦艳青,杨兴有,赵世民,史宏志

Development and Application of Tobacco SSR Markers Based on Genome Re-Sequencing of Different Tobacco Types

Xinqi Geng,Huijuan Yang,Yanqing Qin,Xingyou Yang,Shimin Zhao,Hongzhi Shi

表3 各测序品种SNP检测结果

Table 3 Sequencing species SNP variant results

样本Sample WF1H WM3H LY1306 QY96 K326 BX 位于基因组上游的突变数The number of mutations in the upstream region 297 482 355 710 352 194 583 404 542 089 364 475 位于基因组下游的突变数The number of mutations in the downstream region 104 695 123 307 123 562 200 044 187 112 126 102 位于基因组区间的突变数The number of mutations in the intergenic region 3 152 030 3 528 347 3 463 461 5 285 151 4 736 983 3 386 957 位于5′端非翻译区域的突变数The number of mutations in the 5′ UTR region 6 916 9 009 8 867 12 127 10 357 8 526 位于3′端非翻译区域的突变数The number of mutations in the 3′ UTR region 9 323 12 474 12 396 17 041 14 327 11 539 位于剪切区域的突变数The number of mutations in the splice region 4 377 5 285 5 334 6 393 5 547 5 146 位于内含子区域的突变数The number of mutations in the intron region 111 300 132 075 133 106 191 130 172 108 134 178 位于外显子区域的突变数The number of mutations in the exon region 79 199 94 325 95 240 113 782 100 511 95 749 总突变数The total mutations 3 765 322 4 260 532 4 194 160 6 409 072 5 769 034 4 132 672