大豆百粒重相关基因的全基因组发掘分析

宿洋, 杨静, 郭勇, 杜维俊, 邱丽娟

Whole Genome Discovery and Analysis of Genes Related to 100-Seed Weight in Soybean

Su Yang, Yang Jing, Guo Yong, Du Weijun, Qiu Lijuan

表1 调控植物籽粒大小/粒重的功能基因

Table 1 Functional genes related to seed size/weight in plants

基因名称 Gene name 物种 Species 基因编号 Gene ID 生物学功能 Biological function 大豆中基因拷贝数 Copy number in soybean 参考文献 Reference 激素信号转导Hormone signal transduction KLU Arabidopsis AT1G13710 Cytochrome P450 5 [20] SOB7 Arabidopsis AT1G17060 Cytochrome p450 72C1 13 [21] AHK3 Arabidopsis AT1G27320 Histidine kinase 3 2 [20] CKX5 Arabidopsis AT1G75450 Cytokinin oxidase 5 2 [22] AHK4 Arabidopsis AT2G01830 Histidine kinase: cytokinin-binding receptor 5 [20] DET2 Arabidopsis AT2G38050 Brassinolide biosynthetic 2 [20] CKX1 Arabidopsis AT2G41510 Cytokinin oxidase/dehydrogenase 1 2 [22] EOD3 Arabidopsis AT2G46660 Cytochrome P450 3 [21] DWF4 Arabidopsis AT3G50660 Cytochrome P450 superfamily protein 3 [5] CYP78A9 Arabidopsis AT3G61880 Cytochrome P450 78a9 3 [21] AP2 Arabidopsis AT4G36920 Integrase-type DNA-binding superfamily protein 4 [7] ATMYB56 Arabidopsis AT5G17800 Myb domain protein 56 2 [22] AGG3 Arabidopsis AT5G20635 Atypical heterotrimeric G-protein gamma-subunit 4 [23] AHK2 Arabidopsis AT5G35750 Histidine kinase AHK2 2 [20] ABA2 Arabidopsis AT1G52340 Xanthoxin dehydrogenase 2 [21] ABI5 Arabidopsis AT2G36270 Basic-leucine zipper (bZIP) transcription factor family protein 3 [21] BRI1 Arabidopsis AT4G39400 Protein BRASSINOSTEROID INSENSITIVE 1 2 [21] ARF2 Arabidopsis AT5G62000 Auxin response factor 2 4 [5] DWARF 61 Rice OS01G0718300 Receptor serine/threonine kinase 2 [23] OsBZR1 Rice OS07G0580500 Brassinosteroid (BR) regulated growth response 6 [21] GSK2 Rice OS05G0207500 GSK3/SHAGGY-like kinase 1 [21] BG1 Rice Os03g0175800 Positive regulator of auxin response and transport 1 [21] DWARF 11 Rice OS04G0469800 Brassinosteroid (BR) biosynthesis 1 [21] GE Rice OS07G0603700 Cytochrome P450 78A5 5 [23] 泛素代谢途径Ubiquitin pathway GW2 Rice OS02G0244100 RING-type E3 ubiquitin ligase 2 [8] UBP15 Arabidopsis AT1G17110 Ubiquitin-specific protease 15 2 [24] DA1 Arabidopsis AT1G19270 Ubiquitin receptors 2 [25] DA2 Arabidopsis AT1G78420 E3 ubiquitin-protein ligase DA2 2 [26] EOD1 Arabidopsis AT3G63530 E3 ubiquitin ligase 2 [21] DAR1 Arabidopsis AT4G36860 Ubiquitin binding protein 6 [23] 其他Others SAMBA Arabidopsis AT1G32310 Valine-tRNA ligase 2 [23] MINI3 Arabidopsis AT1G55600 Member of WRKY Transcription Factor 2 [2] IKU1 Arabidopsis AT2G35230 VQ motif-containing protein 5 [20] TTG2 Arabidopsis AT2G37260 WRKY family transcription factor 2 [20] SOD7 Arabidopsis AT3G11580 AP2/B3-like transcriptional factor 4 [21] IKU2 Arabidopsis AT3G19700 Leucine-rich repeat protein kinase 1 [20] FER Arabidopsis AT3G51550 Malectin/receptor-like protein kinase 2 [21] STK Arabidopsis AT4G09960 MADS box transcription factor 2 [22] 基因名称 Gene name 物种 Species 基因编号 Gene ID 生物学功能 Biological function 大豆中基因拷贝数 Copy number in soybean 参考文献 Reference RPT2A Arabidopsis AT4G29040 Regulatory particle AAA-ATPase 2A 4 [23] ANT Arabidopsis AT4G37750 Integrase-type DNA-binding superfamily protein 8 [20] DPA4 Arabidopsis AT5G06250 AP2/B3-like transcriptional factor 4 [21] MET1 Arabidopsis AT5G49160 Methyltransferase 1 2 [23] AGL62 Arabidopsis AT5G60440 AGAMOUS-like 62 24 [20] SHB1 Arabidopsis At4G25350 Acts in cryptochrome signaling 1 [20] GS2 Rice Os02G0701300 Growth-regulating factor 4-like 1 [21] SMG1 Rice OS02G0787300 Mitogen-activated protein kinase kinase 5 2 [23] GS3 Rice OS03G0407400 Keratin-associated protein 5-5 4 [21] qGL3 Rice Os03G0646900 Serine/threonine phosphatase 1 [21] RGB1 Rice OS03G0669100 Deoxyuridine 5'-triphosphate nucleotidohydrolase-like 2 [23] OsGIF1 Rice OS03G0733600 GRF1-interacting factor 1 4 [23] GS5 Rice OS05G0158500 Serine carboxypeptidase-like 26 3 [23] RGA1 Rice OS05G0333200 Guanine nucleotide-binding protein alpha-1 subunit 4 [23] OsMAPK6 Rice OS06G0154500 Mitogen-activated protein kinase 1-like 2 [27] TGW6 Rice OS06G0623700 Protein STRICTOSIDINE SYNTHASE-LIKE 10 6 [28] GW6a Rice OS06G0650300 Probable N-acetyltransferase HLS1 2 [23] GLW7 Rice Os07G0505200 Plant-specific transcription factor 1 [23] GW7 Rice OS07G0603300 Protein LONGIFOLIA 1 8 [29] GW8 Rice OS08G0531600 Squamosa promoter binding like protein 16 2 [30] DEP1 Rice OS09G0441900 Keratin-associated protein 5-5 4 [31]