抗列当食用向日葵杂交种经葵1408叶绿体基因组特征及密码子偏好性分析

马军, 张祥雷, 安呈洁, 杨学文, 张博琳, 张武, 王鹏冬

Chloroplast Genome Characteristics and Codon Bias Analysis of Anti-Broomrape Confectionery Sunflower Hybrid Jingkui 1408

Ma Jun, Zhang Xianglei, An Chengjie, Yang Xuewen, Zhang Bolin, Zhang Wu, Wang Pengdong

表2 JK1408叶绿体基因组密码子不同位置的GC含量及ENC值

Table 2 GC contents and ENC values of codons at different locations in the chloroplast genome of JK1408

基因 Gene GC1 (%) GC2 (%) GC3 (%) GCall (%) 有效密码子数 ENC 基因 Gene GC1 (%) GC2 (%) GC3 (%) GCall (%) 有效密码子数 ENC ycf4 44.32 40.54 30.27 38.38 51.04 psaA 52.86 43.68 32.76 43.10 49.59 ycf3 47.34 38.46 32.54 39.45 59.17 petD 51.55 39.13 27.33 39.34 39.25 ycf2 41.89 34.24 36.91 37.68 52.81 petB 49.07 41.67 27.31 39.35 43.52 ycf1 34.94 27.43 26.61 29.70 46.14 petA 52.65 37.38 30.84 40.29 50.97 rps8 41.48 40.74 28.15 36.79 48.57 ndhK 43.81 44.25 26.55 38.20 51.26 rps7 53.21 46.15 23.72 41.03 46.00 ndhJ 50.94 37.11 30.82 39.62 43.40 rps4 53.47 39.60 28.71 40.59 52.21 ndhI 41.92 35.93 25.75 34.53 43.82 rps3 46.12 33.33 23.74 34.40 43.16 ndhH 50.25 36.04 28.17 38.16 49.79 rps2 43.46 43.04 27.43 37.97 46.26 ndhG 45.76 33.90 28.25 35.97 52.00 rps18 34.31 42.16 25.49 33.99 44.76 ndhF 36.96 35.89 24.60 32.48 45.30 rps14 44.55 47.52 33.66 41.91 39.24 ndhE 42.16 34.31 18.63 31.70 43.98 rps11 54.74 55.47 27.01 45.74 50.38 ndhC 45.45 33.06 24.79 34.44 48.97 rpoC2 46.52 37.49 30.45 38.15 50.87 ndhB 41.29 38.55 32.09 37.31 48.60 rpoC1 50.29 36.52 26.23 37.68 48.88 ndhA 45.05 39.84 18.96 34.71 41.16 rpoB 50.52 37.32 27.80 38.55 48.50 matK 38.52 34.33 27.94 33.60 46.82 rpoA 44.35 32.14 29.76 35.42 51.62 clpP 59.39 38.07 30.46 42.64 50.07 rpl22 39.35 40.00 23.87 34.41 39.13 cemA 39.13 28.26 30.87 32.75 49.80 rpl20 37.80 45.67 27.56 37.01 46.96 ccsA 32.82 37.15 24.77 31.58 49.45 rpl2 50.18 47.27 33.45 43.64 56.40 atpI 50.40 37.90 28.23 38.84 46.54 rpl14 56.10 37.40 26.83 40.11 45.15 atpF 46.49 32.43 32.97 37.30 51.82 rbcL 57.00 43.00 30.86 43.62 47.42 atpE 52.96 41.04 25.37 39.80 51.30 psbD 52.26 43.22 32.49 42.66 44.10 atpB 55.71 41.68 29.06 42.15 48.21 psbC 53.38 46.20 29.54 43.04 43.82 atpA 56.19 39.49 25.15 40.27 46.83 psbB 53.83 45.97 30.45 43.42 47.88 accD 42.20 35.76 30.35 36.11 50.67 psbA 50.00 43.50 33.05 42.18 41.16 平均Average 47.06 39.29 28.36 38.24 47.62 psaB 48.03 43.40 29.25 40.23 46.17