作物杂志,2016, 第6期: 49–52 doi: 10.16035/j.issn.1001-7283.2016.06.009

• 遗传育种·种质资源·生物技术 • 上一篇    下一篇

高原作物青稞根及根际内生细菌群落结构的高通量分析

刘振东1,王波2,薛蓓1,王强锋3,侯磊1   

  1. 1 西藏农牧学院,860000,西藏林芝
    2 西藏自治区农牧科学院农业研究所,850032,西藏拉萨
    3 四川省农业科学院生物技术核技术研究所,610061,四川成都
  • 收稿日期:2016-08-27 修回日期:2016-10-18 出版日期:2016-12-15 发布日期:2018-08-26
  • 作者简介:刘振东,讲师,研究方向为微生物资源的发掘与利用
  • 基金资助:
    西藏自治区自然科学基金(2015212-14-23);西藏自治区青年教师创新计划项目(QCZ2016-45);国家现代农业(大麦青稞)产业技术体系加工试验站(CARS-05)

High Throughput Analysis of the Endophytic Bacterial Community Structure in Roots and Rhizosphere of Highland Barley of Tibetan Plateau

Liu Zhendong1,Wang Bo2,Xue Bei1,Wang Qiangfeng3,Hou Lei1   

  1. 1 Tibet Agricultural and Animal Husbandry College,Nyingchi 860000,Tibet,China
    2 Agricultural Institute,Tibet Academy of Agricultural and Animal Husbandry Sciences,Lhasa 850032,Tibet,China
    3 Institute of Biological & Nuclear Technology,Sichuan Academy of Agricultural Sciences,Chengdu 610061,Sichuan,China;
  • Received:2016-08-27 Revised:2016-10-18 Online:2016-12-15 Published:2018-08-26

摘要:

利用高通量测序技术分析了西藏青稞主栽品种藏青2000根及根际内生细菌的16S V4变异区序列,同时应用UparseRON、KA等软件整理和统计样品序列数和操作分类单元(OTU)数,分析物种丰度及Alpaha多样性等指标。获得的用于分析青稞根部内生细菌的有效序列和OTUs为55 192/3 613,用于分析青稞根际土壤内生细菌的有效序列和OTUs为62 181/4 399;根部及根际土壤Chao1指数分别为3 443.4290和4 632.5820,shannon多样性指数分别为8.542和9.967。在门水平对代表性OTU进行注释发现,青稞根及根际土壤内生细菌主要是变形菌门(Proteobacteria)、拟杆菌门(Bacteroidetes)、放线菌门(Actinobacteria)、酸杆菌门(Acidobacteria)、厚壁菌门(Firmicutes)。在属水平上主要是假单胞菌属(Pseudomonas)、链霉菌属(Streptomyces)、土地杆菌属(Pedobacter)、黄杆菌属(Flavobacterium)、红游动菌属(Rhodoplanes)。结果显示,青稞根及根际内生细菌具有丰富的多样性,且二者的优势菌属一致。

关键词: 青稞, 根, 根际, 内生细菌, 种类, 丰度

Abstract:

High-throughput sequencing technology has been applied to the determination of 16S V4 variation sequences of the endophytic bacteria in roots and rhizosphere of the main cultivar of highland barley (Zangqing 2000) in Tibetan Plateau. The number of sample sequences and operational taxonomic units (OTUs) were sorted and calculated and the species richness and alpha diversity index were analyzed by Uparse and KRONA. The results showed that the useful sequences and OTUs of the endophytic bacteria in roots were 55 192/3 613, while the useful sequences and OTUs of the endophytic bacteria in rhizosphere were 62 181/4 399. The Chao1 indices of the endophytic bacteria in roots and rhizosphere were 3 443.4290 and 4 632.5820, respectively, and the Shannon diversity indices were 8.542 and 9.967, respectively. The endophytic bacteria in roots and rhizosphere of highland barley were mainly included in Pseudomonas, Streptomyces, Pedobacter, Flavobacterium and Rhodoplanes. These results indicate that the endophytic bacteria in roots and rhizosphere of highland barley ZQ2000 have rich diversity and the dominant genera of the bacteria in both roots and rhizosphere.

Key words: Highland barley, Root, Rhizosphere, Endophytic bacteria, Species, Richness

表1

样品中的tag和OTUs统计"

样品sample Total tag Taxon tag Unclassified Mitochondria Chloroplast tag Unique tag OTU number
ZQ2000.1.r 67 671 54 226 9 896 3 549 3 669
ZQ2000.2.r 63 671 51 708 8 406 3 557 3 588
ZQ2000.3.r 67 264 59 643 4 372 3 249 3 583
平均值Mean 66 202 55 192 7 558 3 452 3 613
ZQ2000.1.s 59 159 53 413 164 5 582 4 009
ZQ2000.2.s 75 030 69 298 87 5 645 4 930
ZQ2000.3.s 69 506 63 832 255 5 419 4 257
平均值Mean 67 898 62 181 169 5 547 4 399

图1

各分类水平上的序列构成"

表2

门水平上的物种相对丰度"

样品Sample Proteobacteria Bacteroidetes Actinobacteria Acidobacteria Firmicutes Others
ZQ2000.1.r 61.1 14.1 13.6 2.9 0.8 21.6
ZQ2000.2.r 63.8 14.6 9.8 3.1 0.8 22.5
ZQ2000.3.r 70.0 11.8 8.6 2.7 0.6 18.1
平均值Mean 64.9 13.5 10.6 2.9 0.7 20.9
ZQ2000.1.s 47.3 11.9 8.8 7.4 0.4 36.1
ZQ2000.2.s 40.0 7.9 8.5 11.9 0.5 39.1
ZQ2000.3.s 52.5 9.7 9.2 7.6 0.7 30.0
平均值Mean 46.6 9.8 8.8 8.9 0.5 35.2

表3

属水平上的物种相对丰度"

样品Sample Pseudomonas Streptomyces Pedobacter Flavobacterium Rhodoplanes Others
ZQ2000.1.r 1.7 2.5 0.8 0.6 0.8 93.6
ZQ2000.2.r 1.4 1.5 0.9 0.4 0.8 95.0
ZQ2000.3.r 3.1 1.0 0.8 1.2 0.7 93.2
平均值Mean 2.1 1.7 0.8 0.7 0.8 93.9
ZQ2000.1.s 0.6 0.5 0.5 0.6 1.2 96.6
ZQ2000.2.s 0.4 0.4 0.1 0.1 2.4 96.6
ZQ2000.3.s 0.6 0.5 0.4 0.5 1.8 96.2
平均值Mean 0.5 0.5 0.3 0.4 1.8 96.5

表4

Alpha diversity indices统计"

样品Sample Shannon Chao 1 物种数Observed species
ZQ2000.1.r 8.0860 3 495.1635 2 997
ZQ2000.2.r 8.7512 3 397.1178 2 933
ZQ2000.3.r 8.0134 3 438.0043 2 888
平均值Mean 8.2835 3 443.4290 2 939
ZQ2000.1.s 9.9022 3 911.0820 3 448
ZQ2000.2.s 10.1277 5 361.9856 4 077
ZQ2000.3.s 9.8716 4 624.6773 3 582
平均值Mean 9.9672 4 632.5820 3 702
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