作物杂志,2026, 第5期: 124140 doi: 10.16035/j.issn.1001-7283.2026.05.015
顾一舟1(
), 颜世伟1, 朱爱国1, 陈坤梅1, 陈佳1, 陈继康1, 高钢1, 王晓飞1, 吴独清1, 杨桢1, 陈平1,2(
)
Gu Yizhou1(
), Yan Shiwei1, Zhu Aiguo1, Chen Kunmei1, Chen Jia1, Chen Jikang1, Gao Gang1, Wang Xiaofei1, Wu Duqing1, Yang Zhen1, Chen Ping1,2(
)
摘要:
挖掘和鉴定重金属修复作物苎麻的ATP结合盒(ATP-binding cassettes,ABC)转运蛋白对重金属污染修复品种的选育与利用具有重要意义。为筛选在镉胁迫中发挥作用的BnABCs,通过生物信息学共鉴定到143个苎麻ABC转运蛋白基因家族成员,其中69%的成员均属于ABCG与ABCB亚家族,大部分位于细胞膜上。与双子叶植物拟南芥和工业大麻分别有57和86对共线性基因,与单子叶植物水稻和玉米分别有31和15对共线性基因。苎麻内发现26对旁系同源基因,其中只有1对Ka/Ks值大于1,表明受到正向选择,其余25对均小于1,表明受到纯化选择。对基因保守结构进行分析,发现BnABCs含有典型的ATP结合结构域组成元件Walker A motifs、Walker B motifs与ABC标签序列(Walker C motifs)。顺式作用元件分析发现,启动子区域有大量光反应、植物激素反应和胁迫反应元件;通过转录组数据筛选出组织特异性表达,且启动子区域含有胁迫元件和MYB结合位点的BnABCs基因,作为响应镉胁迫的候选基因,大部分属于ABCG与ABCB亚家族,且跨膜结构域数目几乎均高于3。实时荧光定量PCR表明其在镉胁迫下的根、茎和叶中呈不同表达模式,其中BnABC128与水稻中镉耐性的基因同源性最高,可能具有外排镉的能力。
| [1] | Theodoulou F L. Plant ABC transporters. Biochimica et Biophysica Acta, 2000, 1465(1/2):79-103. |
| [2] |
Martinoia E, Klein M, Geisler M, et al. Multifunctionality of plant ABC transporters-more than just detoxifiers. Planta, 2002, 214 (3):345-355.
pmid: 11855639 |
| [3] |
Verrier P J, Bird D, Burla B, et al. Plant ABC proteins - a unified nomenclature and updated inventory. Trends in Plant Science, 2008, 13:151-159.
doi: 10.1016/j.tplants.2008.02.001 pmid: 18299247 |
| [4] |
George A M. ABC transporters 45 years on. International Journal of Molecular Sciences, 2023, 24(23):16789.
doi: 10.3390/ijms242316789 |
| [5] |
Theodoulou F, Kerr I. ABC transporter research:going strong 40 years on. Biochemical Society Transactions, 2015, 43(5):1033-1040.
doi: 10.1042/BST20150139 pmid: 26517919 |
| [6] |
Do T H T, Martinoia E, Lee Y. Functions of ABC transporters in plant growth and development. Current Opinion in Plant Biology, 2018, 41:32-38.
doi: S1369-5266(17)30151-6 pmid: 28854397 |
| [7] | Yazaki K. ABC transporters involved in the transport of plant secondary metabolites. FEBS Letters, 2006, 4:1183-1191. |
| [8] |
Yang W, Liu X, Yu S W, et al. The maize ATP-binding cassette (ABC) transporter ZmMRPA6 confers cold and salt stress tolerance in plants. Plant Cell Reports, 2023, 43:13.
doi: 10.1007/s00299-023-03094-7 pmid: 38135780 |
| [9] |
Lee J Y, Yang J G, Zhitnitsky D, et al. Structural basis for heavy metal detoxification by an Atm1-Type ABC Exporter. Science, 2014, 343:1133-1136.
doi: 10.1126/science.1246489 pmid: 24604198 |
| [10] |
Ghuge S A, Nikalje G C, Kadam U S, et al. Comprehensive mechanisms of heavy metal toxicity in plants,detoxification,and remediation. Journal of Hazardous Materials, 2023, 450:131039.
doi: 10.1016/j.jhazmat.2023.131039 |
| [11] |
Zhang B, Jia W T, Lin K Q, et al. Integrative analysis of the ABC gene family in sorghum revealed SbABCB11 participating in translocation of cadmium from roots to shoots. Planta, 2025, 261 (3):63.
doi: 10.1007/s00425-025-04637-w |
| [12] |
Yu Y T, Zeng L B, Yan Z, et al. Identification of ramie genes in response to Pratylenchus coffeae infection challenge by digital gene expression analysis. International Journal of Molecular Sciences, 2015, 16(9):21989-22007.
doi: 10.3390/ijms160921989 |
| [13] |
Chen K M, Li Y L, Yu C M, et al. Systematic evaluation of ramie (Boehmeria nivea L.) for phytoremediation of cadmium contaminated soil and the mechanism of microbial regulation. Chemosphere, 2023, 337:139298.
doi: 10.1016/j.chemosphere.2023.139298 |
| [14] |
Zhao Y J, Yu C M, Chen P, et al. Study on remediation of cadmium contaminated paddy field by ramie (Boehmeria nivea L.) floating island and its supporting technology. Environmental Research, 2024, 242:117798.
doi: 10.1016/j.envres.2023.117798 |
| [15] |
Huang C, Zhou J, Jie Y C, et al. A ramie bZIP transcription factor BnbZIP2 is involved in drought,salt,and heavy metal stress response. DNA and Cell Biology, 2016, 35(12):776-786.
doi: 10.1089/dna.2016.3251 |
| [16] |
Ma Y H, Jie H M, Zhao L, et al. Identification of the Xyloglucan Endotransglycosylase/Hydrolase (XTH) gene family members expressed in Boehmeria nivea in response to cadmium stress. International Journal of Molecular Sciences, 2022, 23(24):16104.
doi: 10.3390/ijms232416104 |
| [17] |
Rasheed A, Jie Y, Nawaz M, et al. Improving drought stress tolerance in ramie (Boehmeria nivea L.) using molecular techniques. Frontiers in Plant Science, 2022, 13:911610.
doi: 10.3389/fpls.2022.911610 |
| [18] |
Ma Y H, Jie H M, Zhao L, et al. BnXTH1 regulates cadmium tolerance by modulating vacuolar compartmentalization and the cadmium binding capacity of cell walls in ramie (Boehmeria nivea). Journal of Hazardous Materials, 2024, 470:134172.
doi: 10.1016/j.jhazmat.2024.134172 |
| [19] |
Chen K M, Ming Y L, Luan M B, et al. The chromosome-level assembly of ramie (Boehmeria nivea L.) genome provides insights into molecular regulation of fiber fineness. Journal of Natural Fibers, 2023, 20:2168819.
doi: 10.1080/15440478.2023.2168819 |
| [20] |
Chen C J, Wu Y, Li J W, et al. TBtools-II: A “one for all, all for one” bioinformatics platform for biological big-data mining. Molecular Plant, 2023, 16(11):1733-1742.
doi: 10.1016/j.molp.2023.09.010 |
| [21] | Yang M Y, Derbyshire M K, Yamashita R A, et al. NCBI's conserved domain database and tools for protein domain analysis. Current Protocols in Bioinformatics, 2020, 69(1):e90. |
| [22] |
Artimo P, Jonnalagedda M, Arnold K, et al. ExPASy: SIB bioinformatics resource portal. Nucleic Acids Research, 2012, 40:597-603.
doi: 10.1093/nar/gks400 pmid: 22661580 |
| [23] |
Chou K C, Shen H B. Cell-PLoc: a package of Web servers for predicting subcellular localization of proteins in various organisms. Nature Protocols, 2008, 3(2):153-162.
doi: 10.1038/nprot.2007.494 |
| [24] |
Wang Y P, Tang H B, Debarry J D, et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Research, 2012, 40(7):e49.
doi: 10.1093/nar/gkr1293 |
| [25] |
Tamura K, Stecher G, Kumar S. MEGA11: molecular evolutionary genetics analysis version 11. Molecular Biology and Evolution, 2021, 38(7):3022-3027.
doi: 10.1093/molbev/msab120 pmid: 33892491 |
| [26] |
Nguyen L T, Schmidt H A, Von haeseler A, et al. IQ-TREE: A fast and effective stochastic algorithm for estimating maximum- likelihood phylogenies. Molecular Biology and Evolution, 2015, 32(1):268-274.
doi: 10.1093/molbev/msu300 |
| [27] | Zhang H, Gao S H, Lercher M J, et al. EvolView, an online tool for visualizing, annotating and managing phylogenetic trees. Nucleic Acids Research, 2012, 40(1):569-572. |
| [28] | Bailey T L, Boden M, Buske F A, et al. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Research, 2009, 37(2):202-208. |
| [29] | Lescot M, Déhais P, Thijs G, et al. PlantCARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research, 2002, 30(1):325-327. |
| [30] |
Geourjon C, Deléage G. SOPMA: significant improvements in protein secondary structure prediction by consensus prediction from multiple alignments. Bioinformatics, 1995, 11(6):681-684.
doi: 10.1093/bioinformatics/11.6.681 |
| [31] | Sonnhammer E L, Heijne G V, Krogh A. A hidden Markov model for predicting transmembrane helices in protein sequences. Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology. Menlo: AAAI Press, 1998:175-182. |
| [32] |
朱守晶, 史文娟. 苎麻谷胱甘肽-S-转移酶基因BnGSTU1的克隆和表达分析. 植物遗传资源学报, 2018, 19(6):1197-1204.
doi: 10.13430/j.cnki.jpgr.20180228002 |
| [33] |
Fu S, Lu Y F, Zhang X Z, et al. The ABC transporter ABCG36 is required for cadmium tolerance in rice. Journal of Experimental Botany, 2019, 70:5909-5918.
doi: 10.1093/jxb/erz335 pmid: 31328224 |
| [34] |
Li H, Li C X, Sun D, et al. OsPDR20 is an ABCG metal transporter regulating cadmium accumulation in rice. Journal of Environmental Sciences, 2024, 136:21-34.
doi: 10.1016/j.jes.2022.09.021 pmid: 37923431 |
| [35] |
Zhang X, Ma Y, Lai D W, et al. RsPDR8,a member of ABCG subfamily,plays a positive role in regulating cadmium efflux and tolerance in radish (Raphanus sativus L.). Plant Physiology and Biochemistry, 2023, 205:108149.
doi: 10.1016/j.plaphy.2023.108149 |
| [36] |
Wang H Z, Liu Y, Peng Z H, et al. Ectopic expression of poplar ABC transporter PtoABCG36 confers Cd tolerance in Arabidopsis thaliana. International Journal of Molecular Sciences, 2019, 20:3293.
doi: 10.3390/ijms20133293 |
| [37] | 唐桃霞, 孔维萍, 任凯丽, 等. 植物ABC转运蛋白功能研究进展. 西北农业学报, 2023, 32(1):1-10. |
| [38] |
Kang J, Park J, Choi H, et al. Plant ABC transporters. The Arabidopsis Book, 2011, 9:e0153.
doi: 10.1199/tab.0153 |
| [39] |
Huang J J, Li X Y, Chen X, et al. Genome-wide identification of soybean ABC transporters relate to aluminum toxicity. International Journal of Molecular Sciences, 2021, 22(12):6556.
doi: 10.3390/ijms22126556 |
| [40] |
Zhang D D, Yu Z, Zeng B, et al. Genome-wide analysis of the ABC gene family in almond and functional predictions during flower development,freezing stress,and salt stress. BMC Plant Biology, 2024, 24(1):12.
doi: 10.1186/s12870-023-04698-7 |
| [41] |
蔡方阳, 赵懿琛, 李义, 等. 杜仲ABC转运蛋白基因家族成员鉴定与分析. 浙江农业学报, 2021, 33(9):1581-1591.
doi: 10.3969/j.issn.1004-1524.2021.09.02 |
| [42] | 朱康, 王柯蔼, 王秋艳, 等. 甘蓝型油菜PDR基因家族鉴定及系统进化分析. 植物生理学报, 2022, 58(12):2351-2363. |
| [43] | Song W Y, Yamaki T, Yamaji N, et al. A rice ABC transporter, OsABCC1, reduces arsenic accumulation in the grain. Proceedings of the National Academy of Sciences of the United States of America, 2014, 111(44):15699-15704. |
| [44] |
Lefèvre F, Baijot A, Boutry M. Plant ABC transporters: time for biochemistry?. Biochemical Society Transactions, 2015, 43(5):931-936.
doi: 10.1042/BST20150108 pmid: 26517906 |
| [45] |
Bovet L, Feller U, Martinoia E. Possible involvement of plant ABC transporters in cadmium detoxification: a cDNA sub- microarray approach. Environment International, 2005, 31(2):263-267.
doi: 10.1016/j.envint.2004.10.011 |
| [46] |
Dahuja A, Kumar R R, Sakhare A, et al. Role of ATP‐binding cassette transporters in maintaining plant homeostasis under abiotic and biotic stresses. Physiologia Plantarum, 2021, 171(4):785-801.
doi: 10.1111/ppl.v171.4 |
| [47] |
Dhara A, Raichaudhuri A. ABCG transporter proteins with beneficial activity on plants. Phytochemistry, 2021, 184:112663.
doi: 10.1016/j.phytochem.2021.112663 pmid: 33550197 |
| [48] |
Wang Y C, Wu J C, Li J B, et al. The R2R3-MYB transcription factor ThRAX2 recognized a new element MYB-T (CTTCCA) to enhance cadmium tolerance in Tamarix hispida. Plant Science, 2023, 329:111574.
doi: 10.1016/j.plantsci.2022.111574 |
| [49] |
Zhang P P, Wang R K, Ju Q, et al. The R2R3-MYB transcription factor MYB49 regulates cadmium accumulation. Plant Physiology, 2019, 180(1):529-542.
doi: 10.1104/pp.18.01380 pmid: 30782964 |
| [50] |
Zhu S J, Shi W J, Jie Y C, et al. A MYB transcription factor, BnMYB2, cloned from ramie (Boehmeria nivea) is involved in cadmium tolerance and accumulation. PLoS One, 2020, 15(5):e0233375.
doi: 10.1371/journal.pone.0233375 |
| [51] |
Xu Z, Wang T, Hou S, et al. A R2R3-MYB, BpMYB1, from paper mulberry interacts with DELLA protein BpGAI1 in soil cadmium phytoremediation. Journal of Hazardous Materials, 2023, 463:132871.
doi: 10.1016/j.jhazmat.2023.132871 |
| [52] |
Kim D Y, Bovet L, Maeshima M, et al. The ABC transporter AtPDR8 is a cadmium extrusion pump conferring heavy metal resistance. The Plant Journal, 2007, 50(2):207-218.
doi: 10.1111/tpj.2007.50.issue-2 |
| [53] | 何浩, 王志明, 张立强, 等. 小麦PDR基因家族的鉴定与表达分析. 农业生物技术学报, 2023, 31(3):445-459. |
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