基于元分析的水稻抽穗期QTL图谱整合研究

doi:10.16035/j.issn.1001-7283.2017.03.006

Abstract

Abstract:

Heading date was one of the important rice breeding objectives which determined the suitable planting area and planting season for rice varieties and led to a stable and high yield. A total of 207 QTLs information related to heading date of rice from 43 mapping populations were collected. These QTLs and their common markers were integrated with the reference map Cornell 2001 by BioMercator 2.1. The real QTLs were calculated by the method of meta-analysis. Moreover, a consensus map of rice QTL conferring heading date was constructed. In total 14 real QTLs and their linked markers were found from 1, 2, 4, 5, 6, 7, 8 and 10 chromosomes. This research offered a basis for fine mapping, map-based cloning and marker-assisted breeding of rice for heading date.

Key words: Rice, Heading date, QTL integration, Meta-analysis

Xiuping Li,Wendong Ma,Xianguo Zhang,Baigeng Miao,Jiamei Li,Siqi Zhang. Study on Integration of QTL based on Meta-Analysis Related to Heading Date of Rice[J].Crops, 2017, 33(3): 29-34.

Figures/Tables 3

Table 1

Fig.1

Table 2

References 63

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序号 NO.	QTL数量 QTL number	群体类型 Population type	分析方法 Analysis method	参考文献 Reference
1	2	RIL	IM	[19]
2	3	RIL	CIM	[20]
3	7	F₂	IM	[21]
4	1	RTL	CIM	[22]
5	4	RIL	CIM	[23]
6	8	RIL	IM	[24]
7	1	DH	IM	[25]
8	10	DH	IM	[26]
9	10	RIL	CIM	[27]
10	8	BC₃F₂	CIM	[28]
11	8	DH	IM	[29]
12	2	RIL	MCIM	[30]
13	1	BC₁F₂	IM	[31]
14	1	RIL	IM	[32]
15	1	F₂	IM	[33]
16	3	BCF₁	IM	[34]
17	2	F₂	IM	[35]
18	4	BC₂F₅	CIM	[36]
19	4	F₂	CIM	[37]
20	1	BC₃F₂	CIM	[38]
21	3	F₁	CIM	[39]
22	5	RIL	IM	[40]
23	4	BC₂F₄	CIM,ICIM	[41]
24	4	RIL	CIM	[42]
25	7	RIL	CIM	[43]
26	2	RIL	CIM	[44]
27	10	RIL	CIM	[45]
28	11	BC₂	IM	[46]
29	4	RIL	CIM	[47]
30	6	RIL	CIM	[48]
31	6	RIL	CIM	[49]
32	4	F₂	CIM	[50]
33	2	DH	IM	[51]
34	11	BC₃F₁	CIM	[52]
35	2	BC₄F₂	CIM	[53]
36	12	RIL	CIM	[54]
37	10	RIL	MCIM	[55]
38	1	F₂	IM	[56]
39	2	DH	IM	[57]
40	3	RIL	IM	[58]
41	5	RIL	IM	[59]
42	3	RIL	CIM	[60]
43	9	RIL	CIM	[61]

染色体Chr.	AIC值 AIC value	最大可能位置 Map position	置信区间Confidence interval		图距 Map distance	左标记 Left marker	坐标 Coordinate	右标记 Right marker	坐标 Coordinate
染色体Chr.	AIC值 AIC value	最大可能位置 Map position	From	To	图距 Map distance	左标记 Left marker	坐标 Coordinate	右标记 Right marker	坐标 Coordinate
1	56.44	25.98	24.32	27.63	3.31	RM6324	23.10	RG532	30.10
1	56.44	41.65	40.47	42.73	2.26	RM1195	39.50	RM5359	41.90
1	56.44	86.60	84.62	88.58	3.96	RM294A	83.90	RM294B	89.40
2	11.23	55.95	50.40	61.50	11.10	RM550	46.40	RM5812	61.40
4	5.44	10.65	9.34	11.96	2.62	RM307	9.50	RM5953	12.00
5	32.20	16.19	11.87	20.51	8.64	C5-1	11.90	RM1200	20.51
5	32.20	24.20	20.96	27.44	6.48	RM1200	20.51	RM582	27.40
5	32.20	57.11	47.18	67.05	19.87	RM509	47.20	RM430	67.00
6	144.96	11.20	10.35	12.04	1.69	RM584	110.20	RZ398	11.50
6	144.96	54.32	52.80	55.84	2.60	RM3724	54.70	RM539	56.40
6	144.96	75.71	73.86	77.56	3.70	RM3	74.70	RM2654	79.00
6	144.96	143.00	138.36	147.63	9.27	RM340	138.40	RM176	147.60
7	218.81	56.80	55.35	58.25	2.90	PK12-2	56.90	RM533	58.30
7	218.81	68.36	67.07	69.64	2.57	RG678	67.30	CX-1	69.00
7	218.81	82.28	81.13	83.44	2.31	RM500	81.10	RM11	83.40
7	218.81	113.48	113.22	113.75	0.53	RM248	113.00	RM3555	120.40
8	37.34	37.62	34.42	40.54	6.12	RM1376	34.40	RM5556	40.50
8	37.34	44.83	43.43	46.23	2.80	MRG7266	43.30	RM544	46.10
8	37.34	69.44	68.51	70.37	1.86	RM350	68.50	RM264	70.40
8	37.34	75.65	69.89	81.41	11.52	RM264	70.40	RM32	80.90
10	13.10	71.39	70.74	72.04	1.30	MRG4392	70.70	MRG5704	72.10

Study on Integration of QTL based on Meta-Analysis Related to Heading Date of Rice

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[6]	Bo Zeng. Renovation of Main Cultivated Rice Varieties in China in the Past 30 Years [J]. Crops, 2018, 34(3): 1-7.
[7]	Lili Zhang,Yizhou Zhao,Xin Li,Ting Mao,Yan Liu,Zhan Zhang,Shanjun Ni,Fucai Liu. Mutant Analysis on Quality Trait of Different Japonica Rice Progenies Induced by ⁶⁰Co-γ Ray Irradiation [J]. Crops, 2018, 34(3): 51-56.
[8]	Li Zhang,Zantang Li,Shiyin Wang,Yanchao Ma,Yang Dongfang,Xueyong Li,Jiang Xu. Physiological and Genetic Analysis of Rice Mutant osnad1 Defective in Nitrogen Absorption [J]. Crops, 2018, 34(3): 68-76.
[9]	Chen He,Guiping Zheng,Haicheng Zhao,Liqiang Chen,Hongyu Li,Yandong Lü,Jiang Song. Effects of Increasing Humic Acid but Reducing Fertilization on Panicle Traits and Yield of Rice in Saline-Alkali Soil [J]. Crops, 2018, 34(3): 129-134.
[10]	Yong Cui. The Research Progress of Water-Dry Rotation Methods in Paddy Field [J]. Crops, 2018, 34(3): 8-14.
[11]	Zhiqiang Tang,Liqiang Dong,Rui Li,Liying Zhang,Na He,Yuedong Li. Effects of Nitrogen and Soil Type on Seedling Quality and Nutrient Absorption in Rice [J]. Crops, 2018, 34(3): 141-147.
[12]	Bo Zeng,Shixian Sun,Jie Wang. Registration of Main Rice Varieties and Its Application in Recent 30 Years in China [J]. Crops, 2018, 34(2): 1-5.
[13]	Zhibo Zhou,Yake Yi,Guanghui Chen. Effects of Sowing Amount, Medium and Chemical Treatment on Seedling Quality and Yield of High Quality Late-Rice Variety of Yuzhenxiang [J]. Crops, 2018, 34(2): 129-135.
[14]	Ge Qu,Zhengguang Chen,Xue Wang. Identification of Rice Varieties Using NIR Spectroscopy and SIMCA, PLS-DA Methods [J]. Crops, 2018, 34(2): 166-170.
[15]	Jianjun Wang,Yongjun Zeng,Yanhong Yi,Qiming Zhang,Qixing Hu,Xueming Tan,Shan Huang,Qingyin Shang,Yanhua Zeng,Qinghua Shi. The Uniformity of Mechanical-Transplanted Early-Season Rice under Different Seeding Rates and Its Effects on the Formation of Grain Yield [J]. Crops, 2018, 34(2): 141-147.