Crops ›› 2025, Vol. 41 ›› Issue (2): 1-8.doi: 10.16035/j.issn.1001-7283.2025.02.001

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Research Progress on Germplasm Resources and Multi-Omics of Oryza officinalis

Jiang Hui1(), Zhong Qiaofang2, Yin Fuyou2, Li Jinlu2, Liu Li2, Zhang Yun2, Wang Bo2, Jiang Cong2, Cheng Zaiquan2, Zhang Hui1(), Xiao Suqin2()   

  1. 1College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming 650201, Yunnan, China
    2Biotechnology and Germplasm Resources Research Institute, Yunnan Academy of Agricultural Sciences, Kunming 650221, Yunnan, China
  • Received:2024-04-09 Revised:2024-05-15 Online:2025-04-15 Published:2025-04-16

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Abstract:

Oryza officinalis possesses a rich genetic diversity and contains a multitude of superior genes, making it an essential component of the rice genetic resources. Compared to other wild rices, research in germplasm resources and multi-omics of O.officinalis has lagged behind. This article aims to provide a reference for the conservation and breeding research of O.officinalis resources. It reviewed the current status and progress in the genetics of O.officinalis from four aspects: germplasm resources, genomic studies, transcriptomic research, and proteomic analysis. Furthermore, it offered a perspective on future research directions in this field.

Key words: Oryza officinalis, Germplasm resources, Genomics, Transcriptomics, Proteomics

Table 1

Genomic characteristics of O.officinalis"

项目
Item		 药用野生稻第3染色体短臂
Chromosome 3 short arm of O.officinalis		 药用野生稻v1.0
O.officinalis v1.0
大小Size (Mb) 26.2 584.1
无间隔长度Gapless length (Mb) 26.1 583.2
染色体数目Number of chromosomes 1 12
Scaffold N50 (Mb) 26.2 49.5
Contig N50 (kb) 71 367.6
GC含量GC content (%) 44.5 44
测序深度Sequencing depth 8.0x 60.0x
测序手段Sequencing method Sanger Illumina HiSeq2500和Pacific Bio RSII
登录号Accession number GCA_000717455.1 GCA_008326285.1
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