Crops ›› 2019, Vol. 35 ›› Issue (4): 10-16.doi: 10.16035/j.issn.1001-7283.2019.04.002

Previous Articles     Next Articles

Advances in Molecular Markers of Soybean Disease Resistance

Liu Nianxi,Chen Liang,Li Zhi,Liu Baoquan,Liu Jia,Yi Zhigang,Dong Zhimin,Wang Shuming   

  1. Soybean Research Institute, Jilin Academy of Agricultural Sciences, Changchun 130033, Jilin, China
  • Received:2019-04-01 Revised:2019-06-17 Online:2019-08-15 Published:2019-08-06
  • Contact: Zhimin Dong

RichHTML

21

PDF (PC)

389

Abstract:

Soybean (Glycine max L.) disease is one of the most important factors affecting soybean yield and quality. With the publication of the whole genome sequence of soybean, SNP as a new generation of molecular marker has been effectively applied in resistance molecular marker-assisted breeding. This article reviews the progress made by researchers with mapping methods, resistance genes localization, screening and identification of candidate genes for soybean disease resistance since 2010. This review could provide a helpful reference for further functional analysis of resistance-related genes and molecular breeding in soybean.

Key words: Soybean, Disease resistance, Molecular markers

Table 1

Partly molecular markers of SMV since 2010"

基因名称Gene name 亲本Parents 染色体Chromosome 分子标记Molecular marker 参考文献Reference
Rsc15 RN-9×7605 6 Sat_213-Sat_286 [15,17]
Rsc7 Kefeng 1×Nannong 1138-2 2 BARCSOYSSR_02_0621-BARCSOYSSR_02_0632 [18]
Rsc8 Kefeng 1×Nannong 1138-2 2 ZL-42-ZL-52 [19]
Rsc3Q Qihuang 1×Nannong 1138-2 13 BARCSOYSSR_13_1114-BARCSOYSSR_13_1136 [20]
Rsc4 Dabaima×Nannong 1138-2 14 BARCSOYSSR_14_1413-BARCSOYSSR_14_1416 [21]
Rsc3/Rsc6/Rsc17 PI96983×Nannong 1138-2 13 BARCSOYSSR_13_1114-BARCSOYSSR_13_1136 [22]
Rsc7 PI96983×Nannong 1138-2 13 BARCSOYSSR_13_1140-BARCSOYSSR_13_1185 [22]
Rsc14Q Qihuang 1×Nannong 1138-2 13 MY525-MY750 [23]
Rsc18 Kefeng 1×Nannong 1138-2 2 BARCSOYSSR_02_0667-BARCSOYSSR_02_0670 [24]
Rsc18 Qihuang 22×Nannong 1138-2 13 SOYHSP176-Satt334 [24]
Rsc20 Qihuang 1×Nannong 1138-2 13 SSR_13-14-GM_INDEL_13-3 [25]
Rsv1-h Suweon 97×Williams 82 13 BARCSOYSSR_13_1114-BARCSOYSSR_13_1115 [26]

Table 2

Partly molecular markers of PRR since 2010"

基因名称Gene name 亲本Parents 染色体Chromosome 分子标记Molecular marker 参考文献Reference
RpsUN1 Williams×PI 567139B 3 BARCSOYSSR_03_0233-BARCSOYSSR_03_0246 [30]
RpsUN2 Williams×PI 567139B 16 CAPS6-SNP2 [30]
Rps10 Wandou 15×Williams 17 Sattwd15-24/25-Sattwd15-47 [31]
Rsp11 Williams×PI 594527 7 BARCSOYSSR_07_0286-BARCSOYSSR_07_0300 [32]
RpsHC18 Jikedou 2×Huachun 18 3 BARCSOYSSR_03_0267-BARCSOYSSR_03_0269 [33]
RpsJS Nannong 10-1×06-070583 18 SOYSSR_18_1859-SSRG60752K [34]
RpsWY Huachun 2×Wayao 3 bin401 [35]
[1] 韩立德, 盖钧镒, 张文明 . 大豆营养成分研究现状. 种子, 2003(5):57-59.
[2] 王艳, 韩英鹏, 李文滨 . 大豆分子标记研究新进展. 大豆科学, 2015,34(1):148-162.
[3] Martin T, Nikolai A, Mugford S G , et al. Combining SNP discovery from next-generation sequencing data with bulked segregant analysis (BSA) to fine-map genes in polyploid wheat. BMC Plant Biology, 2012,12(1):12-14.
[4] Liu W Y, Kang J H, Jeong H S , et al. Combined use of bulked segregant analysis and microarrays reveals SNP markers pinpointing a major QTL for resistance to Phytophthora capsici in pepper. Theoretical and Applied Genetics, 2014,127(11):2503-2513.
[5] Wu J, Wang Q, Xu L , et al. Combining SNP genotyping array with bulked segregant analysis to map a gene controlling adult-plant resistance to stripe rust in wheat line 03031-1-5 H62. Phytopathology, 2017,108(1):103-113.
[6] Zhang X, Li R, Chen L , et al. Fine-mapping and candidate gene analysis of the Brassica juncea white-flowered mutant Bjpc2 using the whole-genome resequencing. Molecular Genetics and Genomics, 2017,293(2):359-370.
[7] Han Y, Zhao F, Gao S , et al. Fine mapping of a male sterility gene ms-3 in a novel cucumber (Cucumis sativus L.) mutant. Theoretical and Applied Genetics, 2018,131(3):449-460.
[8] 张红, 王超楠, 黄志银 , 等. 近等基因系构建及其在育种中应用综述. 中国园艺文摘, 2018,34(6):54-56.
[9] Kobayashi T, Yamamoto K, Suetsugu Y , et al. Genetic mapping of the rice resistance-breaking gene of the brown planthopper Nilaparvata lugens. Proceedings Biological Sciences, 2014,281:296-306.
[10] Chung C L, Poland J, Kump K , et al. Targeted discovery of quantitative trait loci for resistance to northern leaf blight and other diseases of maize. Theoretical and Applied Genetics, 2011,123(2):307-326.
[11] Warrington C V, Zhu S, Parrott W A , et al. Seed yield of near-isogenic soybean lines with introgressed quantitative trait loci conditioning resistance to corn earworm (lepidoptera: noctuidae) and soybean looper (lepidoptera: noctuidae) from PI 229358. Journal of Economic Entomology, 2008,101(4):1471-1477.
[12] Zheng Z, Ma J, Stiller J , et al. Fine mapping of a large-effect QTL conferring Fusarium crown rot resistance on the long arm of chromosome 3B in hexaploid wheat. BMC Genomics, 2015,16(1):1-7.
[13] Cho E K, Goodman R M . Strains of soybean mosaic virus: classification based on virulence in resistant soybean cultivars. Phytopathology, 1979,69(5):467-470.
[14] Yulho K, Oksun K, Bongchoon L , et al. G7H,a new soybean mosaic virus strain: its virulence and nucleotide sequence of CI gene. Plant Disease, 2003,87(11):1372-1375.
[15] Yang Q H, Gai J Y . Identification,inheritance and gene mapping of resistance to a virulent soybean mosaic virus strain SC15 in soybean. Plant Breeding, 2011,130(2):128-132.
[16] Wang D, Zhao L, Li K , et al. Marker-assisted pyramiding of soybean resistance genes RSC4,RSC8,and RSC14Q to soybean mosaic virus. Journal of Integrative Agriculture, 2017,16(11):2413-2420.
[17] Ren R, Liu S, Karthikeyan A , et al. Fine-mapping and identification of a novel locus Rsc15,underlying soybean resistance to soybean mosaic virus. Theoretical and Applied Genetics, 2017,130(11):2395-2410.
[18] Yan H, Wang H, Cheng H , et al. Detection and fine-mapping of SC7 resistance genes via linkage and association analysis in soybean. Journal of Integrative Plant Biology, 2015,57(8):722-729.
[19] Zhao L, Wang D, Zhang H , et al. Fine mapping of the RSC8 locus and expression analysis of candidate SMV resistance genes in soybean. Plant Breeding, 2016,135(6):701-706.
[20] Zheng G J, Yang Y Q, Ying M A , et al. Fine mapping and candidate gene analysis of resistance gene RSC3Q,to soybean mosaic virus,in Qihuang 1. Journal of Integrative Agriculture, 2014,13(12):2608-2615.
[21] Wang D, Ma Y, Liu N , et al. Fine mapping and identification of the soybean RSC4 resistance candidate gene to soybean mosaic virus. Plant Breeding, 2011,130(6):653-659.
[22] Yang Y, Zheng G, Han L , et al. Genetic analysis and mapping of genes for resistance to multiple strains of soybean mosaic virus in a single resistant soybean accession PI 96983. Theoretical and Applied Genetics, 2013,126(7):1783-1791.
[23] Ma Y, Wang D, Li H , et al. Fine mapping of the RSC14Q,locus for resistance to soybean mosaic virus in soybean. Euphytica, 2011,181(1):127-135.
[24] Li K, Ren R, Adhimoolam K , et al. Genetic analysis and identification of two soybean mosaic virus resistance genes in soybean [Glycine max (L.) Merr]. Plant Breeding, 2016,134(6):684-695.
[25] Karthikeyan A, Li K, Li C , et al. Fine-mapping and identifying candidate genes conferring resistance to soybean mosaic virus strain SC20 in soybean. Theoretical and Applied Genetics, 2018,131(2):461-476.
[26] Ma F, Wu X, Chen Y , et al. Fine mapping of the Rsv1-h,gene in the soybean cultivar Suweon 97 that confers resistance to two Chinese strains of the soybean mosaic virus. Theoretical and Applied Genetics, 2016,129(11):2227-2236.
[27] Sugimoto T, Kaga A, Hajika M , et al. Genetic analysis and identification of DNA markers linked to a novel sojae resistance gene in the Japanese soybean cultivar Waseshiroge. Euphytica, 2011,182(1):133-145.
[28] Li N, Zhao M, Liu T , et al. A novel soybean dirigent gene GmDIR22 contributes to promotion of lignan biosynthesis and enhances resistance to Phytophthora sojae. Frontiers in Plant Science, 2017,8(1):1-8.
[29] Lin F, Zhao M, Ping J , et al. Molecular mapping of two genes conferring resistance to Phytophthora sojae in a soybean landrace PI567139B. Theoretical and Applied Genetics, 2013,126(8):2177-2185.
[30] Li L, Feng L, Wang W , et al. Fine mapping and candidate gene analysis of two loci conferring resistance to Phytophthora sojae,in soybean. Theoretical and Applied Genetics, 2016,129(12):2379-2386.
[31] Zhang J, Xia C, Duan C , et al. Identification and candidate gene analysis of a novel phytophthora resistance gene Rps10 in a Chinese soybean cultivar. PLoS ONE, 2013,8(7):e69799.
[32] Ping J, Fitzgerald J C, Zhang C , et al. Identification and molecular mapping of Rps11,a novel gene conferring resistance to Phytophthora sojae in soybean. Theoretical and Applied Genetics, 2016,129(2):445-451.
[33] Zhong C, Sun S, Li Y , et al. Next-generation sequencing to identify candidate genes and develop diagnostic markers for a novel Phytophthora resistance gene,RpsHC18,in soybean. Theoretical and Applied Genetics, 2018,131(3):525-538.
[34] Sun J, Li L, Zhao J , et al. Genetic analysis and fine mapping of RpsJS,a novel resistance gene to Phytophthora sojae,in soybean [Glycine max (L.) Merr.]. Theoretical and Applied Genetics, 2014,127(4):913-919.
[35] Cheng Y, Ma Q, Ren H , et al. Fine mapping of a Phytophthora-resistance gene RpsWY in soybean (Glycine max L.) by high-throughput genome-wide sequencing. Theoretical and Applied Genetics, 2017,130(5):1041-1051.
[36] 肖亮, 武天龙 . 大豆抗蚜虫研究进展. 中国农学通报, 2013,29(36):326-333.
[37] Meng F, Han Y, Teng W , et al. QTL underlying the resistance to soybean aphid (Aphis glycines Matsumura) through isoflavone-mediated antibiosis in soybean cultivar 'Zhongdou 27'. Theoretical and Applied Genetics, 2011,123(8):1459-1465.
[38] Zhang G, Gu D, Wang D . Mapping and validation of a gene for soybean aphid resistance in PI567537. Molecular Breeding, 2013,32(1):131-138.
[39] Xiao L, Zhong Y P, Wang B , et al. Mapping an aphid resistance gene in soybean [Glycine max (L.) Merr.] P746. Genetics and Molecular Research, 2014,13(4):9152-9160.
[40] Zhang S, Zhang Z, Bales C , et al. Mapping novel aphid resistance QTL from wild soybean,Glycine soja 85-32. Theoretical and Applied Genetics, 2017,130(4):1941-1952.
[41] 娄雪 . 野生大豆抗胞囊线虫病相关SNP标记的开发及其辅助选择. 长春:东北师范大学, 2016.
[42] Chen H, Zhao S, Yang Z , et al. Genetic analysis and molecular mapping of resistance gene to Phakopsora pachyrhizi in soybean germplasm SX6907. Theoretical and Applied Genetics, 2015,128(4):733-743.
[43] Liu M, Li S, Swaminathan S , et al. Identification of a soybean rust resistance gene in PI567104B. Theoretical and Applied Genetics, 2016,129(5):863-877.
[44] 李穆, 刘念析, 岳岩磊 , 等. 抗大豆白粉病南方栽培大豆种质资源的初步筛选. 大豆科学, 2016,35(2):209-212.
[45] Wang Y, Shi A, Zhang B , et al. Mapping powdery mildew resistance gene in V97-3000 soybean. Plant Breeding, 2013,132(6):625-629.
[46] 宋伟, 赵雪, 徐玲秀 , 等. 大豆抗菌核病位点挖掘及一致性QTL分析. 中国油料作物学报, 2017,39(6):763-770.
[47] Zhao X, Han Y, Li Y , et al. Loci and candidate gene identification for resistance to Sclerotinia sclerotiorum in soybean [Glycine max (L.) Merr.] via association and linkage maps. The Plant Journal, 2015,82(2):245-255.
[1] Zhao Yue,Sun Yufeng,Han Chengwei,Han Xicai,Jiang Ying,Cao Kun,Wang Xiaonan. Application Progresses of Molecular Marker Techniques Research on Hemp Sex Differentiation [J]. Crops, 2019, 35(3): 20-23.
[2] Yang Junkai,Shen Yang,Cai Xiaoxi,Wu Shengyang,Li Jianwei,Sun Mingzhe,Jia Bowei,Sun Xiaoli. Genome-Wide Identification and Expression Patterns Analysis of the PHD Family Protein in Glycine max [J]. Crops, 2019, 35(3): 55-65.
[3] Xixi Dai,Heming Zhan,Xinghong Cui,Yinyue Zhao,Dandan Shan,Liang Zhang,Tiejun Wang. A Mathematical Model of Density Coupling and Its Optimization in Maize-Soybean Intercropping [J]. Crops, 2019, 35(2): 128-135.
[4] Chunyu Lin,Xiaoyu Liang,Huiyan Zhao,Yang Wang. Analysis of Genetic Diversity and Population Structure of Main Soybean Varieties in Heilongjiang Province [J]. Crops, 2019, 35(2): 78-83.
[5] Bo Liu,Ling Wei,Junhong Xiao,Haifeng Yang,Xueyan Duan,Aiping Chen,Ruilan Ren. Study on Improving the Hybrid Seed Setting Rate of Soybean [J]. Crops, 2019, 35(1): 81-84.
[6] Yue Li,Haiyan Li,Jidong Yu,Jie Deng,Yuanfu Gong,Junshu Zhu. Allelopathy of Extracts from Hemp Straw on Soybean [J]. Crops, 2019, 35(1): 175-179.
[7] Huiqin Wen,Tianling Cheng,Ziyou Pei,Xue Li,Lisheng Zhang,Mei Zhu. Analysis of Comprehensive Characteristics of Wheat Varieties Registered in Shanxi Province in Recent Years [J]. Crops, 2018, 34(4): 32-36.
[8] Yun Zhao,Cailong Xu,Xu Yang,Suzhen Li,Jing Zhou,Jicun Li,Tianfu Han,Cunxiang Wu. Effects of Sowing Methods on Seedling Stand and Production Profit of Summer Soybean under Wheat-Soybean System [J]. Crops, 2018, 34(4): 114-120.
[9] Mingjun Zhang,Zhongfeng Li,Lili Yu,Jun Wang,Lijuan Qiu. Identification and Screening of Protein Subunit Variation Germplasm from Both Mutants and Natural Population in Soybean [J]. Crops, 2018, 34(3): 44-50.
[10] Shanshan Lu,Chenglai Wu,Yan Li,Chunqing Zhang. The Molecular Basis of Holding the Feature and Genetic Purity for Maize Inbred Lines [J]. Crops, 2018, 34(1): 41-48.
[11] Tianle Ma,Jianxin Zhang. Effects of Different Multiple Cropping Methods on Dry Matter Accumulation, Distribution and Yield of Summer Soybean [J]. Crops, 2018, 34(1): 156-159.
[12] Jiani Zhu,Huiping Dai,Shuhe Wei,Genliang Jia,Dejing Chen,Jinjin Pei,Qing Zhang,Long Qiang. Effects of Applying Zn on the Growth and Zn Accumulation in Soybean at Flowering Stage [J]. Crops, 2018, 34(1): 152-155.
[13] Lina Li,Longguo Jin,Chuanxiao Xie,Changlin Liu. Determining Blind Samples of Transgenic Maize and Transgenic Soybean [J]. Crops, 2017, 33(6): 37-44.
[14] Xuechao Zhou,Surong Ding,Yunshan Wei,Yanfang Zhou,Xue Wei,Rina Na,Feng Li. Evaluation of Adaptability of Different Vegetable Soybean Cultivars (Lines) in Chifeng Area [J]. Crops, 2017, 33(3): 44-48.
[15] Guoyong Ren,Wei Li,Lifeng Zhang,Caijie Wang,Haiying Dai,Jinlong Wang,Ran Xu,Yanwei Zhang. The Resistance to Soybean Cyst Nematode Race 1 of Transgenic Soybean with hrf2 Encoding HarpinXooc [J]. Crops, 2017, 33(3): 49-53.
Viewed
Full text


Abstract

Cited
  Shared   
  Discussed   
[1] Guangcai Zhao,Xuhong Chang,Demei Wang,Zhiqiang Tao,Yanjie Wang,Yushuang Yang,Yingjie Zhu. General Situation and Development of Wheat Production[J]. Crops, 2018, 34(4): 1 -7 .
[2] Jie Gao,Qingfeng Li,Qiu Peng,Xiaoyan Jiao,Jinsong Wang. Effects of Different Nutrient Combinations on Plant Production and Nitrogen, Phosphorus and Potassium Utilization Characteristics in Waxy Sorghum[J]. Crops, 2018, 34(4): 138 -142 .
[3] Wenlian Bai,Yi Zheng,Jingxiu Xiao. Below-Ground Biotic Mechanisms of Phosphorus Uptake and Utilization Improved by Cereal and Legume Intercropping-A Review[J]. Crops, 2018, 34(4): 20 -27 .
[4] Menghan Wei, Huifang Xie, Lu Xing, Hui Song, Shujun Wang, Suying Wang, Haiping Liu, Nan Fu, Jinrong Liu. Comprehensive Evaluation of Yield and Agronomic Characters of Foxtail Millet Germplasms from North China[J]. Crops, 2018, 34(4): 42 -47 .
[5] Xiaoyu Liang, Chunyu Lin, Shumei Ma, Yang Wang. Mining Elite Alleles for Germination Ability in Rice (Oryza sativa L.) under Salt and Alkaline Stress[J]. Crops, 2018, 34(4): 48 -52 .
[6] Shaokun Li,Wanxu Zhang,Keru Wang,Wanbing Yu,Yongsheng Chen,Dongsheng Han,Xiaoxia Yang,Chaowei Liu,Guoqiang Zhang,Yizhou Wang,Fenghe Liu,Jianglu Chen,Jingjing Yang,Ruizhi Xie,Peng Hou,Bo Ming. The Selection of High Yield Maize Cultivars Suitable for Dense Planting and Grain Mechanical Harvesting in North of Xinjiang[J]. Crops, 2018, 34(4): 62 -68 .
[7] Xiaoyong Zhang,Youlian Yang,Shujiang Li,Rongchuan Xiong,Hong Xiang. Effects of Exogenous GA3 and 6-BA on Leaf Senescence in Low Temperature Stress of Virus-Free Potato Cutting Seedlings[J]. Crops, 2018, 34(4): 95 -101 .
[8] Ruiqi Ma,Zhen Qi,Xuhong Chang,Demei Wang,Zhiqiang Tao,Yushuang Yang,Jinfeng Feng,Min Sun,Guangcai Zhao. Regulation Effects of Growth Regulators on Plant Characters, Yield and Quality of Winter Wheat[J]. Crops, 2018, 34(1): 133 -140 .
[9] Jiani Zhu,Huiping Dai,Shuhe Wei,Genliang Jia,Dejing Chen,Jinjin Pei,Qing Zhang,Long Qiang. Effects of Applying Zn on the Growth and Zn Accumulation in Soybean at Flowering Stage[J]. Crops, 2018, 34(1): 152 -155 .
[10] Tianle Ma,Jianxin Zhang. Effects of Different Multiple Cropping Methods on Dry Matter Accumulation, Distribution and Yield of Summer Soybean[J]. Crops, 2018, 34(1): 156 -159 .